Out of curiosity I drained the oil and cut open the oil filter, there's a little bit of super-fine glitter visible in the oil filter element, but no flakes or big chunks that I can see. The glitter could potentially be left over from the Cera-Tec additive, but it's a small enough amount that I'm totally comfortable with the thought of it being due to the engine break-in process.
I did notice that the old oil seems to be very thin, despite how much assembly lube I used and the fact that the break-in oil was SAE 30... I'm seriously considering running a slightly heavier oil, like 15w-40, because the old oil being that thinned out concerns me slightly.
I'm having a hell of a time trying to decide whether I want to drop the trans now or wait until the new clutch shows up. On the one hand, I would know exactly what's going on inside that bellhousing, and if it's just a matter of a few bolts that came loose I would probably just put it all back together and drive it... But when the new clutch finally arrives I'll be pulling the trans YET AGAIN to install it.
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